A small tool to convert lower case fasta sequences to upper case and save as a new fasta file.
- Python 100%
| src/fasta_uppercaser | ||
| tests | ||
| web | ||
| .gitignore | ||
| LICENSE.txt | ||
| main.py | ||
| pyproject.toml | ||
| README.md | ||
fasta_uppercaser
A small tool to convert lower case fasta sequences to upper case and save as a new fasta file.
Usage
First of all, always have a copy of the original file in a safe place, then...
- Create and activate your virtual environment and install
fasta_uppercaser. - Call the application followed by the original file path (the one containing the lower case letters) and the destination file path (file that will contain the uppercase only letters).
fasta_uppercaser my_lowercase_file.fasta my_uppercase_file.fasta
- Never use the same filename for original and destination files.
- Make sure all file paths are correct before start.
- Make sure to have read and write permissions in the folder where the original file is and the one where the destination file will be.
Installation
In a virtual environment:
pip install ./fasta_uppercaser-<version>-py3-none-any.whl
You may also install it using pipx.
License
fasta_uppercaser is distributed under the terms of the LGPL-3.0-or-later license.