Check md5sum of fastq files downloaded from LaCTAD.
- Python 100%
| src/md5_check | ||
| tests | ||
| .gitignore | ||
| LICENSE.txt | ||
| main.py | ||
| pyproject.toml | ||
| README.md | ||
MD5-Check
A tool to check md5sum of fastq files downloaded from LaCTAD.
Table of Contents
Installation
Download md5-check package and install it using pip.
pip install md5_check-0.1.0-py3-none-any.whl
Usage
md5-check will list md5 (checksum) and fastq (sequences) files in a directory and based on their names compare the checksum values from the donwloaded file and one calculated lacally based on the sequence file.
It will indicate if any of the downloaded files has checksum mismatches, which may indicate a corrupted download.
Files pairs must have the same name except by the extension, so a file_example.md5 must have a file_example.fastq.gz pair, otherwise no comparison is possible.
md5-check INPUT_DIR
Arguments: input_dir PATH [required]
License
md5-check is distributed under the terms of the LGPL-3.0-or-later license.